Detailed information of SNP:
|
SNP ID:
sf0630859629(Gbrowse)
Chromosome: chr06 Position: 30859629 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 92.73% | 7.27% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 468 | 89.10% | 10.90% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 88 | 48.86% | 51.14% |
| Japonica Intermediate | 55 | 92.73% | 7.27% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630859629 | C->T | INTERGENIC | None |