Detailed information of SNP:
|
SNP ID:
sf0630885777(Gbrowse)
Chromosome: chr06 Position: 30885777 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 88.56% | 11.44% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 78.38% | 21.62% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630885777 | T->C | INTERGENIC | None |