Detailed information of SNP:
|
SNP ID:
sf0630898698(Gbrowse)
Chromosome: chr06 Position: 30898698 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.78% | 15.22% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 40.00% | 60.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.2) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.1) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.4) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.3) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.8) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.6) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.7) | INTRON |
| sf0630898698 | C->A | LOC_Os06g51084(LOC_Os06g51084.5) | INTRON |