Detailed information of SNP:
|
SNP ID:
sf0630942435(Gbrowse)
Chromosome: chr06 Position: 30942435 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 67.58% | 32.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 496 | 11.69% | 88.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 35.48% | 64.52% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0630942435 | G->T | INTERGENIC | None |