Detailed information of SNP:
|
SNP ID:
sf0631154511(Gbrowse)
Chromosome: chr06 Position: 31154511 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1348 | 96.07% | 3.93% |
| All Indica | 735 | 92.79% | 7.21% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 348 | 89.66% | 10.34% |
| Indica II | 192 | 96.88% | 3.12% |
| Indica Intermediate | 195 | 94.36% | 5.64% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0631154511 | A->G | LOC_Os06g51430(LOC_Os06g51430.1) | INTRON |