Detailed information of SNP:
|
SNP ID:
sf0631159331(Gbrowse)
Chromosome: chr06 Position: 31159331 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 96.88% | 3.12% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 489 | 91.62% | 8.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0631159331 | A->T | INTERGENIC | None |