Detailed information of SNP:
|
SNP ID:
sf0631228656(Gbrowse)
Chromosome: chr06 Position: 31228656 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 54.97% | 45.03% |
| All Indica | 789 | 92.14% | 7.86% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 66 | 24.24% | 75.76% |
| Indica I | 370 | 94.05% | 5.95% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 207 | 89.86% | 10.14% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0631228656 | G->T | LOC_Os06g51540(LOC_Os06g51540.1) | INTRON |