Detailed information of SNP:
|
SNP ID:
sf0631234281(Gbrowse)
Chromosome: chr06 Position: 31234281 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1206 | 78.61% | 21.39% |
| All Indica | 600 | 58.50% | 41.50% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 271 | 63.47% | 36.53% |
| Indica II | 164 | 59.76% | 40.24% |
| Indica Intermediate | 165 | 49.09% | 50.91% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0631234281 | T->G | LOC_Os06g51550(LOC_Os06g51550.1) | SNPs that introduce stop codons |