Detailed information of SNP:
|
SNP ID:
sf0631245672(Gbrowse)
Chromosome: chr06 Position: 31245672 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 71.97% | 28.03% |
| All Indica | 767 | 55.93% | 44.07% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 358 | 62.01% | 37.99% |
| Indica II | 205 | 43.90% | 56.10% |
| Indica Intermediate | 204 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0631245672 | T->A | INTERGENIC | None |