Detailed information of SNP:
|
SNP ID:
sf0700003041(Gbrowse)
Chromosome: chr07 Position: 3041 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 63.42% | 36.58% |
| All Indica | 787 | 62.77% | 37.23% |
| All Japonica | 496 | 63.31% | 36.69% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 365 | 80.27% | 19.73% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 209 | 59.81% | 40.19% |
| Temperate Japonica | 335 | 78.81% | 21.19% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700003041 | A->G | INTERGENIC | None |