Detailed information of SNP:
|
SNP ID:
sf0700007597(Gbrowse)
Chromosome: chr07 Position: 7597 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1339 | 69.68% | 30.32% |
| All Indica | 720 | 45.56% | 54.44% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 323 | 38.39% | 61.61% |
| Indica II | 209 | 59.33% | 40.67% |
| Indica Intermediate | 188 | 42.55% | 57.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700007597 | G->A | INTERGENIC | None |