Detailed information of SNP:
|
SNP ID:
sf0700008625(Gbrowse)
Chromosome: chr07 Position: 8625 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 64.85% | 35.15% |
| All Indica | 795 | 77.74% | 22.26% |
| All Japonica | 496 | 38.71% | 61.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 210 | 58.10% | 41.90% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 334 | 21.86% | 78.14% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700008625 | A->C | INTERGENIC | None |