Detailed information of SNP:
|
SNP ID:
sf0700012379(Gbrowse)
Chromosome: chr07 Position: 12379 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 52.90% | 47.10% |
| All Indica | 792 | 18.56% | 81.44% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 2.96% | 97.04% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 208 | 20.67% | 79.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700012379 | C->T | INTERGENIC | None |