Detailed information of SNP:
|
SNP ID:
sf0700012410(Gbrowse)
Chromosome: chr07 Position: 12410 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 56.08% | 43.92% |
| All Indica | 797 | 68.88% | 31.12% |
| All Japonica | 496 | 38.91% | 61.09% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 374 | 53.21% | 46.79% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 334 | 22.16% | 77.84% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700012410 | G->A | INTERGENIC | None |