Detailed information of SNP:
|
SNP ID:
sf0700012531(Gbrowse)
Chromosome: chr07 Position: 12531 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 73.59% | 26.41% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 496 | 63.51% | 36.49% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 79.40% | 20.60% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700012531 | T->C | INTERGENIC | None |