Detailed information of SNP:
|
SNP ID:
sf0700012911(Gbrowse)
Chromosome: chr07 Position: 12911 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 52.31% | 47.69% |
| All Indica | 788 | 17.77% | 82.23% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 2.16% | 97.84% |
| Indica II | 208 | 45.19% | 54.81% |
| Indica Intermediate | 209 | 18.18% | 81.82% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700012911 | G->A | INTERGENIC | None |