Detailed information of SNP:
|
SNP ID:
sf0700015817(Gbrowse)
Chromosome: chr07 Position: 15817 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 798 | 16.54% | 83.46% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 1.60% | 98.40% |
| Indica II | 212 | 42.92% | 57.08% |
| Indica Intermediate | 211 | 16.59% | 83.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700015817 | G->A | INTERGENIC | None |