Detailed information of SNP:



SNP ID: sf0700015817(Gbrowse)

Chromosome: chr07

Position: 15817
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 51.38% 48.62%
All Indica798 16.54% 83.46%
All Japonica497 98.59% 1.41%
Aus67 100.00% 0.00%
Indica I375 1.60% 98.40%
Indica II212 42.92% 57.08%
Indica Intermediate211 16.59% 83.41%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 92.55% 7.45%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 85.71% 14.29%
Intermediate41 65.85% 34.15%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0700015817 G->A INTERGENIC None