Detailed information of SNP:
|
SNP ID:
sf0700015965(Gbrowse)
Chromosome: chr07 Position: 15965 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 82.81% | 17.19% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 446 | 48.88% | 51.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 292 | 28.08% | 71.92% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 67 | 80.60% | 19.40% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700015965 | T->C | INTERGENIC | None |