Detailed information of SNP:
|
SNP ID:
sf0700036240(Gbrowse)
Chromosome: chr07 Position: 36240 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 96.23% | 3.77% |
| All Indica | 786 | 94.91% | 5.09% |
| All Japonica | 494 | 98.58% | 1.42% |
| Aus | 29 | 89.66% | 10.34% |
| Indica I | 364 | 94.78% | 5.22% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 6 | 83.33% | 16.67% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700036240 | G->A | LOC_Os07g01060(LOC_Os07g01060.1) | INTRON |
| sf0700036240 | G->A | LOC_Os07g01060(LOC_Os07g01060.3) | INTRON |