Detailed information of SNP:
|
SNP ID:
sf0700036565(Gbrowse)
Chromosome: chr07 Position: 36565 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.53% | 33.47% |
| All Indica | 797 | 43.29% | 56.71% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 44.92% | 55.08% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 210 | 38.10% | 61.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700036565 | C->T | LOC_Os07g01060(LOC_Os07g01060.1) | INTRON |
| sf0700036565 | C->T | LOC_Os07g01060(LOC_Os07g01060.3) | INTRON |