Detailed information of SNP:
|
SNP ID:
sf0700049082(Gbrowse)
Chromosome: chr07 Position: 49082 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.08% | 47.92% |
| All Indica | 799 | 17.40% | 82.60% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 1.60% | 98.40% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 18.96% | 81.04% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700049082 | A->C | LOC_Os07g01090(LOC_Os07g01090.1) | Non-Synonymous SNP |
| sf0700049082 | A->C | LOC_Os07g01090(LOC_Os07g01090.2) | Non-Synonymous SNP |