Detailed information of SNP:
|
SNP ID:
sf0700052913(Gbrowse)
Chromosome: chr07 Position: 52913 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 798 | 21.30% | 78.70% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 5.87% | 94.13% |
| Indica II | 213 | 46.48% | 53.52% |
| Indica Intermediate | 210 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700052913 | C->T | INTERGENIC | None |