Detailed information of SNP:
|
SNP ID:
sf0700070969(Gbrowse)
Chromosome: chr07 Position: 70969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.01% | 33.99% |
| All Indica | 796 | 42.84% | 57.16% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 44.92% | 55.08% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700070969 | G->A | INTERGENIC | None |