Detailed information of SNP:
|
SNP ID:
sf0700071352(Gbrowse)
Chromosome: chr07 Position: 71352 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 62.45% | 37.55% |
| All Indica | 795 | 60.25% | 39.75% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 212 | 59.43% | 40.57% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700071352 | C->T | INTERGENIC | None |