Detailed information of SNP:
|
SNP ID:
sf0700085162(Gbrowse)
Chromosome: chr07 Position: 85162 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.10% | 43.90% |
| All Indica | 798 | 70.05% | 29.95% |
| All Japonica | 497 | 39.03% | 60.97% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 21.79% | 78.21% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700085162 | C->T | INTERGENIC | None |