Detailed information of SNP:
|
SNP ID:
sf0700093945(Gbrowse)
Chromosome: chr07 Position: 93945 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 77.44% | 22.56% |
| All Indica | 794 | 70.03% | 29.97% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 55.65% | 44.35% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 72.86% | 27.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700093945 | T->C | INTERGENIC | None |