Detailed information of SNP:
|
SNP ID:
sf0700095792(Gbrowse)
Chromosome: chr07 Position: 95792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 65.98% | 34.02% |
| All Indica | 797 | 43.41% | 56.59% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 209 | 37.80% | 62.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700095792 | C->T | INTERGENIC | None |