Detailed information of SNP:
|
SNP ID:
sf0700102970(Gbrowse)
Chromosome: chr07 Position: 102970 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.71% | 28.29% |
| All Indica | 798 | 83.83% | 16.17% |
| All Japonica | 496 | 63.10% | 36.90% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 79.10% | 20.90% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700102970 | C->T | INTERGENIC | None |