Detailed information of SNP:
|
SNP ID:
sf0700106314(Gbrowse)
Chromosome: chr07 Position: 106314 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 62.00% | 38.00% |
| All Indica | 785 | 42.80% | 57.20% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 59 | 6.78% | 93.22% |
| Indica I | 372 | 45.97% | 54.03% |
| Indica II | 208 | 43.75% | 56.25% |
| Indica Intermediate | 205 | 36.10% | 63.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700106314 | G->A | INTERGENIC | None |