Detailed information of SNP:
|
SNP ID:
sf0700106355(Gbrowse)
Chromosome: chr07 Position: 106355 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 54.43% | 45.57% |
| All Indica | 792 | 84.09% | 15.91% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700106355 | T->C | INTERGENIC | None |