Detailed information of SNP:
|
SNP ID:
sf0700116506(Gbrowse)
Chromosome: chr07 Position: 116506 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 86.41% | 13.59% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 491 | 61.91% | 38.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 48.18% | 51.82% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700116506 | C->A | LOC_Os07g01200(LOC_Os07g01200.1) | Non-Synonymous SNP |
| sf0700116506 | C->A | LOC_Os07g01200(LOC_Os07g01200.2) | Non-Synonymous SNP |