Detailed information of SNP:
|
SNP ID:
sf0700117960(Gbrowse)
Chromosome: chr07 Position: 117960 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 50.88% | 49.12% |
| All Indica | 798 | 16.54% | 83.46% |
| All Japonica | 493 | 97.97% | 2.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 1.60% | 98.40% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 210 | 17.14% | 82.86% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700117960 | C->T | INTERGENIC | None |