Detailed information of SNP:
|
SNP ID:
sf0700120974(Gbrowse)
Chromosome: chr07 Position: 120974 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 55.41% | 44.59% |
| All Indica | 796 | 56.16% | 43.84% |
| All Japonica | 496 | 61.90% | 38.10% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 374 | 54.55% | 45.45% |
| Indica II | 211 | 54.03% | 45.97% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 77.61% | 22.39% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700120974 | C->T | INTERGENIC | None |