Detailed information of SNP:
|
SNP ID:
sf0700145376(Gbrowse)
Chromosome: chr07 Position: 145376 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 66.83% | 33.17% |
| All Indica | 794 | 43.83% | 56.17% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 46.11% | 53.89% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 208 | 39.42% | 60.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700145376 | A->G | INTERGENIC | None |