Detailed information of SNP:
|
SNP ID:
sf0700173113(Gbrowse)
Chromosome: chr07 Position: 173113 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 94.47% | 5.53% |
| All Indica | 794 | 97.73% | 2.27% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700173113 | T->C | LOC_Os07g01280(LOC_Os07g01280.1) | Non-Synonymous SNP |