Detailed information of SNP:
|
SNP ID:
sf0700192001(Gbrowse)
Chromosome: chr07 Position: 192001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 61.12% | 38.88% |
| All Indica | 792 | 41.16% | 58.84% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 369 | 40.38% | 59.62% |
| Indica II | 213 | 45.07% | 54.93% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700192001 | G->A | LOC_Os07g01310(LOC_Os07g01310.1) | INTRON |