Detailed information of SNP:
|
SNP ID:
sf0700216039(Gbrowse)
Chromosome: chr07 Position: 216039 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.77% | 32.23% |
| All Indica | 797 | 45.29% | 54.71% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 48.93% | 51.07% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700216039 | T->C | LOC_Os07g01340(LOC_Os07g01340.1) | INTRON |