Detailed information of SNP:
|
SNP ID:
sf0700232324(Gbrowse)
Chromosome: chr07 Position: 232324 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 69.77% | 30.23% |
| All Indica | 764 | 54.06% | 45.94% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 60 | 26.67% | 73.33% |
| Indica I | 358 | 58.66% | 41.34% |
| Indica II | 205 | 50.73% | 49.27% |
| Indica Intermediate | 201 | 49.25% | 50.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700232324 | C->T | INTERGENIC | None |