Detailed information of SNP:
|
SNP ID:
sf0700239229(Gbrowse)
Chromosome: chr07 Position: 239229 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 86.71% | 13.29% |
| All Indica | 783 | 99.74% | 0.26% |
| All Japonica | 429 | 60.61% | 39.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 201 | 99.00% | 1.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 290 | 50.00% | 50.00% |
| Tropical Japonica | 83 | 91.57% | 8.43% |
| Japonica Intermediate | 56 | 69.64% | 30.36% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700239229 | G->A | LOC_Os07g01380(LOC_Os07g01380.1) | INTRON |