Detailed information of SNP:
|
SNP ID:
sf0700249116(Gbrowse)
Chromosome: chr07 Position: 249116 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 65.36% | 34.64% |
| All Indica | 781 | 48.66% | 51.34% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 367 | 56.13% | 43.87% |
| Indica II | 210 | 41.43% | 58.57% |
| Indica Intermediate | 204 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700249116 | G->A | INTERGENIC | None |