Detailed information of SNP:
|
SNP ID:
sf0700259893(Gbrowse)
Chromosome: chr07 Position: 259893 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.67% | 36.33% |
| All Indica | 795 | 46.04% | 53.96% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 51.07% | 48.93% |
| Indica II | 212 | 43.40% | 56.60% |
| Indica Intermediate | 209 | 39.71% | 60.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700259893 | C->T | LOC_Os07g01410(LOC_Os07g01410.1) | INTRON |