Detailed information of SNP:
|
SNP ID:
sf0700265518(Gbrowse)
Chromosome: chr07 Position: 265518 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.04% | 32.96% |
| All Indica | 798 | 45.36% | 54.64% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 43.19% | 56.81% |
| Indica Intermediate | 210 | 38.57% | 61.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700265518 | G->A | INTERGENIC | None |