Detailed information of SNP:
|
SNP ID:
sf0700312201(Gbrowse)
Chromosome: chr07 Position: 312201 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1270 | 62.83% | 37.17% |
| All Indica | 672 | 41.52% | 58.48% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 54 | 7.41% | 92.59% |
| Indica I | 288 | 37.15% | 62.85% |
| Indica II | 202 | 52.48% | 47.52% |
| Indica Intermediate | 182 | 36.26% | 63.74% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700312201 | G->T | INTERGENIC | None |