Detailed information of SNP:
|
SNP ID:
sf0700313178(Gbrowse)
Chromosome: chr07 Position: 313178 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1248 | 62.98% | 37.02% |
| All Indica | 684 | 34.94% | 65.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 19 | 57.89% | 42.11% |
| Indica I | 306 | 23.53% | 76.47% |
| Indica II | 193 | 56.48% | 43.52% |
| Indica Intermediate | 185 | 31.35% | 68.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 79.41% | 20.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700313178 | A->G | LOC_Os07g01500(LOC_Os07g01500.1) | INTRON |