Detailed information of SNP:
|
SNP ID:
sf0700321812(Gbrowse)
Chromosome: chr07 Position: 321812 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 99.21% | 0.79% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 478 | 97.91% | 2.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 92.77% | 7.23% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700321812 | C->T | LOC_Os07g01510(LOC_Os07g01510.1) | Non-Synonymous SNP |