Detailed information of SNP:
|
SNP ID:
sf0700361980(Gbrowse)
Chromosome: chr07 Position: 361980 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 799 | 83.85% | 16.15% |
| All Japonica | 495 | 5.86% | 94.14% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 92 | 18.48% | 81.52% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700361980 | A->G | INTERGENIC | None |