Detailed information of SNP:
|
SNP ID:
sf0700406866(Gbrowse)
Chromosome: chr07 Position: 406866 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 76.25% | 23.75% |
| All Indica | 799 | 70.59% | 29.41% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700406866 | A->T | INTERGENIC | None |