Detailed information of SNP:
|
SNP ID:
sf0700413800(Gbrowse)
Chromosome: chr07 Position: 413800 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 97.44% | 2.56% |
| All Indica | 749 | 95.33% | 4.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 335 | 90.45% | 9.55% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 201 | 98.51% | 1.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700413800 | G->A | INTERGENIC | None |