Detailed information of SNP:
|
SNP ID:
sf0700533651(Gbrowse)
Chromosome: chr07 Position: 533651 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.63% | 48.37% |
| All Indica | 796 | 83.04% | 16.96% |
| All Japonica | 496 | 0.40% | 99.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700533651 | A->T | INTERGENIC | None |