Detailed information of SNP:
|
SNP ID:
sf0700617041(Gbrowse)
Chromosome: chr07 Position: 617041 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.15% | 41.85% |
| All Indica | 797 | 35.51% | 64.49% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 6.67% | 93.33% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0700617041 | C->T | LOC_Os07g02030(LOC_Os07g02030.1) | INTRON |